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LabKey Server SDMS Integrations
|Standard Assays||Import any type of tabular data using custom assay designs.|
|ELISA||LabKey Server features graphical plate configuration for your experiments.|
|ELISpot||LabKey Server features graphical plate configuration for your experiments.|
The current implementation uses the AID MultiSpot reader.
|LabKey Server features graphical plate configuration for your experiments.|
|Flow Cytometry - FlowJo||Analyze FCS files using a FlowJo workspace.|
|Luminex||Import multiplexed bead arrays based on xMap technology.|
Perform validations with PeptideProphet and ProteinProphet and quantitation scores using XPRESS or Q3.
|Perform searches against FASTA sequence databases using XTandem, Sequest, Mascot, or Comet.|
|NAb||Low- and high-throughput, cross plate, and multi-virus plates are supported.|
|Access||Use Microsoft Access tools on data housed in LabKey using an ODBC connection.|
You can also connect any LabKey data back to Microsoft Excel via an ODBC connection.
|Excel spreadsheet data can be loaded into LabKey for integration and analysis.|
Display the results of an R script inside your LabKey Server applications with the results updating as the underlying data changes.
|Make LabKey a client of your R installation, or make R a client of the data in LabKey Server.|
|RStudio||Use RStudio to design and save reports.|
|RStudio Workbench||Connect to an RStudio Workbench installation.|
|Rserve||Execute R reports against a remote Rserve instance.|
|Tableau||Visualize LabKey data in Tableau via an ODBC connection.|
|Spotfire||Use the JDBC driver to access LabKey data from Spotfire|
|Plotly Dash||Supported via HTTP proxy.|
|REDCap||Synchronize with data in a REDCap server.|
|Informatica EDC||Uses the JDBC driver to access LabKey data|
|OpenEMPI||Connect LabKey data to an Enterprise Master Patient Index.|
|Medidata Rave / CDISC ODM||Connect directly with, and import data from Medidata Rave servers.|
|Skyline||Integrate with the Skyline targeted mass spectrometry tool|
Trans Proteomic Pipeline (TPP)
Tools include XTandem, Comet, PeptideProphet, ProteinProphet, XPRESS, Q3, and Libra
|Analyze mass spectrometry proteomics tools and view their results.|
Protein Annotation Databases
Databases include UniProtKB Species Suffix Map, SwissProt, TrEMBL, Gene Ontology Database and FASTA.
|Data in publicly available databases can be synced and combined with your Mass Spec data.|
|Jupyter Notebook||Create and share computational documents.|
|DbVisualize||Uses the JDBC driver to access LabKey data.|
|Mascot||Work with Mascot server data.|
|PostgreSQL||Configure PostgreSQL as a primary or external data source.|
|MS SQL Server||Configure MS SQL Server as a primary or external data source.|
|Amazon S3||Configure Amazon S3 as a primary or external data source.|
|SAS||Configure SAS as an external data source.|
|Oracle||Configure Oracle as an external data source.|
|MySQL||Configure MySQL as an external data source.|
|Amazon Redshift||Configure an Amazon Redshift database as an external data source.|
|LDAP||Configure authentication with an existing LDAP server.|
|CAS||Configure single sign-on using CAS|
|SAML||Configure authentication against a SAML provider.|
|Duo||Configure two-factor authentication via the Duo service|
Learn more about LabKey Server SDMS
Hear from our users:
Assay and Study Management at Nestlé ResearchLearn more learnmore
Benchling & LabKey at Inzen TherapeuticsLearn more learnmore
Data Management in Precision Oncology at OHSULearn more learnmore
Supporting Precision Medicine at City of HopeLearn more learnmore
Optide-Hunter at the Fred Hutchinson Cancer Research CenterLearn more learnmore
O’Connor LabKey ServerLearn more learnmore
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