Page Type: Resources

06 Jan 2017

Webinars

Live Webinars

Join us for a live webinars hosted by LabKey developers and trainers to learn more about LabKey Server, LabKey Biologics, and custom LabKey solutions.

Recorded Webinars

LabKey Server New UI Walk-Through

November 27, 2017

LabKey UX Designer, Jessi Murray, provides a walk-through of the new LabKey Server UI (launched with v17.3) highlighting key changes to the interface as well as answering questions and sharing plans for future enhancement.

Intro to Panorama

September 21, 2017

Josh Eckels, LabKey VP of Software Engineering, and Vagisha Sharma, Software Developer at the University of Washington’s MacCoss Lab, provide an introduction to Panorama, the LabKey Server module for targeted proteomics research.

Creating a Secure & Compliant Research Environment w/ LabKey Server

August 29, 2017

LabKey Server’s robust security framework provides support for organizations with a wide variety of security and compliance needs, from basic data access permissions to full HIPAA compliance. LabKey VP of Product Management, Adam Rauch, shares a look at LabKey Server’s long-standing security controls as well as newly added compliance features.

Intro to LabKey Biologics

November 2, 2017

LabKey Product Manager, Ryan Luce, Ph.D, provides an introduction to LabKey Biologics! Explore the entity registration, data integration, and workflow management capabilities of the LabKey Biologics system.

Visualizations with LabKey Server

April 20, 2017

LabKey Senior Software Developer, Cory Nathe, explores LabKey Server’s visualization capabilities and unique applications of visualization tools implemented by LabKey users.

Workflows Using LabKey Server

February 23, 2017

LabKey Senior Developer, Susan Hert, explores LabKey Server’s business process workflow capabilities. This session includes an overview of the LabKey Server workflow module, steps for integrating workflows into your LabKey Server, and a look at example applications using these workflow capabilities.

Intro to LabKey Server

January 26, 2017

LabKey User Education Director, Steve Hanson, provides an introduction to LabKey Server! In this webinar, Steve explores the basic functionality of the platform, key use cases, and steps for getting started.

LabKey Server Gradle Migration

April 25, 2017

LabKey Senior Software Engineer, Susan Hert, shares about LabKey’s upcoming build system changes, which migrate from using Ant to Gradle. In this session, Susan explains how to work with Gradle, walks through the changes required of developers, and provides an overview of the transition timeline.

18 Mar 2016

Zika Open-Research Portal

Open-Research for Zika Investigators

Zika Open-Research Portal

In response to the declaration of the Zika virus as a public health emergency, LabKey has launched the Zika Open-Research Portal to help facilitate collaborative research. This portal provides a platform for investigators to make Zika research data, commentary and results publicly available in real-time. Projects are freely available to researchers.

“This is such an urgent public-health emergency that this should not be a race of scientists competing against each other. We’re in a race against the Zika virus, a race against time.”

Koen Van Rompay, D.V.M., Ph.D., California National Primate Research Center, University of California, Davis

Butler, Declan. "Zika researchers release real-time data on viral infection study in monkeys," Nature, 23 February 2016

On the Blog

In the News

11 Mar 2016
LabKey Clients

Representative Clients

Trusted by Leading Research
Organizations Around the World

Representative clients include:

Merck Sharp & Dohme LabKey Client / User
Just Biotherapeutics LabKey Client / User
Massachusetts Institute for Technology (MIT) LabKey Client / User
Janssen Pharmaceutical Company of Johnson & Johnson LabKey Client / User
Bern University Hospital LabKey Client / User
Fred Hutch (Fred Hutchinson Cancer Research Center) LabKey Client / User
Genomics England LabKey Client / User
Public Health England LabKey Client / User
Caprion Biosciences Inc. (CNW Group/Caprion Biosciences) LabKey Client / User
University of South Florida LabKey Client
University of Washington LabKey Client
University of Rochester LabKey Client / User
Public Health Wales LabKey Client / Logo
Southwest National Primate Research Center LabKey Client User
Carbone Cancer Center University of Wisconsin LabKey Client / User

This list features a selection of representative organizations using LabKey solutions and is not comprehensive of all clients. 

 

Additional research programs utilizing LabKey solutions include:

  • Statistical Center for HIV/AIDS Research and Prevention (SCHARP) at the Fred Hutch
  • HIV Vaccine Trial Network (HVTN)
  • Center for AIDS Vaccine Discovery (CAVD)
  • Immune Tolerance Network (ITN)
  • Human Immunology Project Consortium (HIPC)
  • Wisconsin National Primate Research Center (WNPRC)
  • Oregon National Primate Research Center (ONPRC)
  • Tuberculosis Systems Biology Data Coordinating Center (TB DCC)
  • NWBioTrust
  • Juvenile Diabetes Research Foundation (JDRF) Network for Pancreatic Organ Donors With Diabetes (nPOD)
  • Infectious Disease Research Institute (IDRI)
  • Human Islet Research Network (HIRN)
  • Henry M. Jackson Foundation U.S. Military HIV Research Program (MHRP)
  • International Center of Excellence for Malaria Research (ICEMR) at the University of Washington
  • The Environmental Determinants of Diabetes in the Young (TEDDY)
  • Type 1 Diabetes TrialNet
  • Seattle Cancer Care Alliance (SCCA) Prostate Cancer Registry
  • Hutchinson Institute for Cancer Outcomes Research (HICOR)
07 Mar 2016
LabKey Case Studies - Emily Silgard

Case Studies

Just Biotherapeutics, LabKey Biologics software partner

Just Biotherapeutics, Inc.

Just Biotherapeutics partnered with LabKey to develop a “single source of truth” for biologics registration, sample tracking, and workflow management at Just.

Immune Tolerance Network (ITN)

Immune Tolerance Network

The Immune Tolerance Network (ITN) partnered with LabKey to develop the ITN TrialShare portal to provide direct access to post-publication data from ITN studies.

CAVD Dataspace LabKey Server based HIV study data management and exploration portal

CAVD Dataspace

Collaboration for AIDS Vaccine Discovery (CAVD) DataSpace helps researchers discover study data, filter, combine, visualize, and export information of interest, and comply with agreements and regulations on data security.

Argos LabKey Server-based Cancer Data exploration portal

Argos

Argos is a data exploration and visualization portal used by researchers and clinicians to pursue precision oncology by efficiently accessing and analyzing a large volume and variety of related data.

Atlas science portal: LabKey Server based portal for biomedical research data exploration

Atlas Science Portal

The Atlas Science Portal serves as a data integration and operational hub for multiple HIV research networks.

Panorama LabKey Server-based targeted mass spectrometry repository

Panorama

The MacCoss lab at the University of Washington partnered with LabKey Software to develop Panorama, a LabKey Server module that provides a repository for Skyline targeted mass spectrometry documents.

LabKey Server software for primate colony mangement

Primate EHR

LabKey Software partnered with the WNPRC and ONPRC to develop systems for managing and reporting on electronic health records (EHR) and related research data for primate colonies.

O'Connor LabKey Server

O’Connor LabKey Server

The O’Connor lab uses LabKey Server as its “operating system,” speeding its efforts to understand how genetics affects immunity to viruses such as HIV/SIV.

MESA-ICEMR

MESA-ICEMR uses LabKey Server to facilitate collection and analysis of experimental data; integrate clinical and laboratory data from diverse field sites; and access real-time data across continents.

Adair/Kiem Lab

LabKey Server-based assay tools free up Adair/Kiem lab members to focus on data interpretation instead of manual processing, help them look quickly across results collected from multiple experiments over time, and enable them to scale up analysis as fast as sequencing throughput.

23 Dec 2015
LabKey Resource Library

Resource Library

Posters & Publications

Browse LabKey posters and publications, as well as published research using LabKey.

Title Resource Type Year
Quantification reporting using targeted mass spec assays with Panorama and Skyline Poster 2018
Absolute quantification using targeted mass spec assays with Panorama and Skyline Poster 2017
Tracking lineage of biological entities, sample derivation, and structured data within a new biologics registration software platform Poster 2017
Managing small molecule targeted mass spec assays using Skyline and Panorama Poster 2016
An Automated Pipeline to Monitor System Performance in Liquid Chromatography–Tandem Mass Spectrometry Proteomic Experiments Publication 2016
Performing quality control on targeted proteomics assays using Skyline and Panorama Poster 2015
A tuberculosis ontology for host systems biology Publication 2015
Sharing Targeted Proteomics Assays Using Skyline and Panorama Poster 2013
Panorama: A Targeted Proteomics Knowledge Base Publication 2014
High-throughput flow cytometry data normalization for clinical trials Publication 2014
Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform Publication 2013
Ancillary study management systems: a review of needs Publication 2013
LabKey Server: An Open Source Platform for Large-Scale, Translational Research Poster 2013
A cross-platform toolkit for mass spectrometry and proteomics Publication 2012
Panorama: A Private Repository of Targeted Proteomics Assays for Skyline Poster 2012
Ancillary Study Management Systems: What Do We Need? Poster 2012
Installation and Use of LabKey Server for Proteomics Publication 2011
LabKey Server NAb: A tool for analyzing, visualizing and sharing results from neutralizing antibody assays Publication 2011
LabKey Server: An open source platform for scientific data integration, analysis and collaboration Publication 2011
In Situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection (LCM)-LC/MS: Annotation by protein set enrichment analysis (PSEA) and gene ontology (GO). Research Using LabKey 2010
A Proteomic Investigation of Ligand-dependent HSP90 Complexes Reveals CHORDC1 as a Novel ADP-dependent HSP90-interacting Protein. Research Using LabKey 2010
HLA-F Complex without Peptide Binds to MHC Class I Protein in the Open Conformer Form Research Using LabKey 2010
Automated Platform for Fractionation of Human Plasma Glycoproteome in Clinical Proteomics Research Using LabKey 2010
Shotgun strategy-based proteome profiling analysis on the head of silkworm Bombyx mori Research Using LabKey 2010
Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines Research Using LabKey 2010
The development of an integrated platform to identify breast cancer glycoproteome changes in human serum Research Using LabKey 2010
Transcriptomic analysis reveals a mechanism for a pre-fibrotic phenotype in STAT1 knockout mice during SARS-Coronavirus infection Research Using LabKey 2010
Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments Publication 2008
A mouse model repository for cancer biomarker discovery Publication 2008
Development of an automated analysis system for data from flow cytometric intracellular cytokine staining assays from clinical vaccine trials. Publication 2008
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics Publication 2007
Installation and use of the Computational Proteomics Analysis System (CPAS) Publication 2007
Computational Proteomics Analysis System (CPAS): An Extensible, Open-Source Analytic System for Evaluating and Publishing Proteomic Data and High Throughput Biological Experiments. Publication 2005
Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline Publication 2018
Miscarriage and stillbirth following maternal Zika virus infection in nonhuman primates Research Using LabKey 2018
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