Page Type: Resources

06 Jan 2017

Webinars

Live Webinars

Join us for a live webinars hosted by LabKey developers and trainers to learn more about LabKey Server, LabKey Biologics, and custom LabKey solutions.

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TitleDateStart TimeDurationRegister
Intro to LabKey Biologics Join LabKey Product Manager, Ryan Luce, Ph.D, for an introduction to LabKey Biologics! Explore the entity registration, data integration, and workflow management capabilities of the LabKey Biologics system. May 31, 20189:00am PDT1 hour
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Recorded Webinars

LabKey Server New UI Walk-Through

November 27, 2017

LabKey UX Designer, Jessi Murray, provides a walk-through of the new LabKey Server UI (launched with v17.3) highlighting key changes to the interface as well as answering questions and sharing plans for future enhancement.

Intro to Panorama

September 21, 2017

Josh Eckels, LabKey VP of Software Engineering, and Vagisha Sharma, Software Developer at the University of Washington’s MacCoss Lab, provide an introduction to Panorama, the LabKey Server module for targeted proteomics research.

Creating a Secure & Compliant Research Environment w/ LabKey Server

August 29, 2017

LabKey Server’s robust security framework provides support for organizations with a wide variety of security and compliance needs, from basic data access permissions to full HIPAA compliance. LabKey VP of Product Management, Adam Rauch, shares a look at LabKey Server’s long-standing security controls as well as newly added compliance features.

Intro to LabKey Biologics

November 2, 2017

LabKey Product Manager, Ryan Luce, Ph.D, provides an introduction to LabKey Biologics! Explore the entity registration, data integration, and workflow management capabilities of the LabKey Biologics system.

Visualizations with LabKey Server

April 20, 2017

LabKey Senior Software Developer, Cory Nathe, explores LabKey Server’s visualization capabilities and unique applications of visualization tools implemented by LabKey users.

Workflows Using LabKey Server

February 23, 2017

LabKey Senior Developer, Susan Hert, explores LabKey Server’s business process workflow capabilities. This session includes an overview of the LabKey Server workflow module, steps for integrating workflows into your LabKey Server, and a look at example applications using these workflow capabilities.

Intro to LabKey Server

January 26, 2017

LabKey User Education Director, Steve Hanson, provides an introduction to LabKey Server! In this webinar, Steve explores the basic functionality of the platform, key use cases, and steps for getting started.

LabKey Server Gradle Migration

April 25, 2017

LabKey Senior Software Engineer, Susan Hert, shares about LabKey’s upcoming build system changes, which migrate from using Ant to Gradle. In this session, Susan explains how to work with Gradle, walks through the changes required of developers, and provides an overview of the transition timeline.

18 Mar 2016

Zika Open-Research Portal

Open-Research for Zika Investigators

Zika Open-Research Portal

In response to the declaration of the Zika virus as a public health emergency, LabKey has launched the Zika Open-Research Portal to help facilitate collaborative research. This portal provides a platform for investigators to make Zika research data, commentary and results publicly available in real-time. Projects are freely available to researchers.

“This is such an urgent public-health emergency that this should not be a race of scientists competing against each other. We’re in a race against the Zika virus, a race against time.”

Koen Van Rompay, D.V.M., Ph.D., California National Primate Research Center, University of California, Davis

Butler, Declan. "Zika researchers release real-time data on viral infection study in monkeys," Nature, 23 February 2016

On the Blog

In the News

11 Mar 2016
LabKey Clients

Representative Clients

Trusted by Leading Research
Organizations Around the World

Representative clients include:

Merck Sharp & Dohme LabKey Client / User
Just Biotherapeutics LabKey Client / User
Massachusetts Institute for Technology (MIT) LabKey Client / User
Janssen Pharmaceutical Company of Johnson & Johnson LabKey Client / User
Bern University Hospital LabKey Client / User
Fred Hutch (Fred Hutchinson Cancer Research Center) LabKey Client / User
Genomics England LabKey Client / User
Public Health England LabKey Client / User
Caprion Biosciences Inc. (CNW Group/Caprion Biosciences) LabKey Client / User
University of South Florida LabKey Client
University of Washington LabKey Client
University of Rochester LabKey Client / User
Public Health Wales LabKey Client / Logo
Southwest National Primate Research Center LabKey Client User
Carbone Cancer Center University of Wisconsin LabKey Client / User

This list features a selection of representative organizations using LabKey solutions and is not comprehensive of all clients. 

 

Additional research programs utilizing LabKey solutions include:

  • Statistical Center for HIV/AIDS Research and Prevention (SCHARP) at the Fred Hutch
  • HIV Vaccine Trial Network (HVTN)
  • Center for AIDS Vaccine Discovery (CAVD)
  • Immune Tolerance Network (ITN)
  • Human Immunology Project Consortium (HIPC)
  • Wisconsin National Primate Research Center (WNPRC)
  • Oregon National Primate Research Center (ONPRC)
  • Tuberculosis Systems Biology Data Coordinating Center (TB DCC)
  • NWBioTrust
  • Juvenile Diabetes Research Foundation (JDRF) Network for Pancreatic Organ Donors With Diabetes (nPOD)
  • Infectious Disease Research Institute (IDRI)
  • Human Islet Research Network (HIRN)
  • Henry M. Jackson Foundation U.S. Military HIV Research Program (MHRP)
  • International Center of Excellence for Malaria Research (ICEMR) at the University of Washington
  • The Environmental Determinants of Diabetes in the Young (TEDDY)
  • Type 1 Diabetes TrialNet
  • Seattle Cancer Care Alliance (SCCA) Prostate Cancer Registry
  • Hutchinson Institute for Cancer Outcomes Research (HICOR)
07 Mar 2016
LabKey Case Studies - Emily Silgard

Case Studies

Just Biotherapeutics, LabKey Biologics software partner

Just Biotherapeutics, Inc.

Just Biotherapeutics partnered with LabKey to develop a “single source of truth” for biologics registration, sample tracking, and workflow management at Just.

Immune Tolerance Network (ITN)

Immune Tolerance Network

The Immune Tolerance Network (ITN) partnered with LabKey to develop the ITN TrialShare portal to provide direct access to post-publication data from ITN studies.

CAVD Dataspace LabKey Server based HIV study data management and exploration portal

CAVD Dataspace

Collaboration for AIDS Vaccine Discovery (CAVD) DataSpace helps researchers discover study data, filter, combine, visualize, and export information of interest, and comply with agreements and regulations on data security.

Argos LabKey Server-based Cancer Data exploration portal

Argos

Argos is a data exploration and visualization portal used by researchers and clinicians to pursue precision oncology by efficiently accessing and analyzing a large volume and variety of related data.

Atlas science portal: LabKey Server based portal for biomedical research data exploration

Atlas Science Portal

The Atlas Science Portal serves as a data integration and operational hub for multiple HIV research networks.

Panorama LabKey Server-based targeted mass spectrometry repository

Panorama

The MacCoss lab at the University of Washington partnered with LabKey Software to develop Panorama, a LabKey Server module that provides a repository for Skyline targeted mass spectrometry documents.

O'Connor LabKey Server

Primate EHR

LabKey Software partnered with the WNPRC and ONPRC to develop systems for managing and reporting on electronic health records (EHR) and related research data for primate colonies.

LabKey Server software for primate colony mangement

O’Connor LabKey Server

The O’Connor lab uses LabKey Server as its “operating system,” speeding its efforts to understand how genetics affects immunity to viruses such as HIV/SIV.

MESA-ICEMR

MESA-ICEMR uses LabKey Server to facilitate collection and analysis of experimental data; integrate clinical and laboratory data from diverse field sites; and access real-time data across continents.

Adair/Kiem Lab

LabKey Server-based assay tools free up Adair/Kiem lab members to focus on data interpretation instead of manual processing, help them look quickly across results collected from multiple experiments over time, and enable them to scale up analysis as fast as sequencing throughput.

23 Dec 2015
LabKey Resource Library

Resource Library

Publications

Posters

Research Using LabKey

2010

Cha S, Imielinski MB, Rejtar T, et al. In Situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection (LCM)-LC/MS: Annotation by protein set enrichment analysis (PSEA) and gene ontology (GO). Molecular & Cellular Proteomics. 2010.

Gano JJ, Simon JA. A Proteomic Investigation of Ligand-dependent HSP90 Complexes Reveals CHORDC1 as a Novel ADP-dependent HSP90-interacting Protein. Molecular & Cellular Proteomics. 2010;9(2):255-270.

Goodridge JP, Burian A, Lee N, Geraghty DE. HLA-F Complex without Peptide Binds to MHC Class I Protein in the Open Conformer Form. J Immunol. 2010;184(11):6199-6208.

Kullolli M, Hancock WS, Hincapie M. Automated Platform for Fractionation of Human Plasma Glycoproteome in Clinical Proteomics. Analytical Chemistry. 2010;82(1):115-120.

Li J, Hosseini Moghaddam SH, Chen X, Chen M, Zhong B. Shotgun strategy-based proteome profiling analysis on the head of silkworm Bombyx mori. Amino Acids. 2010;39(3):751-761.

Yu W, Taylor JA, Davis MT, et al. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines. Proteomics. 2010;10(6):1172-1189.

Zeng Z, Hincapie M, Haab BB, et al. The development of an integrated platform to identify breast cancer glycoproteome changes in human serum. Journal of Chromatography A. 2010;1217(19):3307-3315.

Zornetzer GA, Frieman MB, Rosenzweig E, et al. Transcriptomic analysis reveals a mechanism for a pre-fibrotic phenotype in STAT1 knockout mice during SARS-Coronavirus infection. J Virol. 2010.

2009

Fornek JL, Gillim-Ross L, Santos C, et al. A Single-Amino-Acid Substitution in a Polymerase Protein of an H5N1 Influenza Virus Is Associated with Systemic Infection and Impaired T-Cell Activation in Mice. J. Virol. 2009;83(21):11102-11115.

Katayama H, Paczesny S, Prentice R, et al. Application of serum proteomics to the Women’s Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings. Genome Med. 2009;1(4):47.

Kollmann TR, Crabtree J, Rein-Weston A, et al. Neonatal Innate TLR-Mediated Responses Are Distinct from Those of Adults. J Immunol. 2009;183(11):7150-7160.

Lazarev AV, Rejtar T, Dai S, Karger BL. Centrifugal methods and devices for rapid in-gel digestion of proteins. Electrophoresis. 2009;30(6):966-973.

Li J, Chen X, Fan W, et al. Proteomic and Bioinformatic Analysis on Endocrine Organs of Domesticated Silkworm, Bombyx mori L. for a Comprehensive Understanding of Their Roles and Relations. Journal of Proteome Research. 2009;8(6):2620-2632.

Pitteri SJ, Hanash SM, Aragaki A, et al. Postmenopausal estrogen and progestin effects on the serum proteome. Genome Med. 1(12):121-121. 2009.

Wang H, Wong C, Chin A, et al. Quantitative Serum Proteomics Using Dual Stable Isotope Coding and nano LC-MS/MSMS. Journal of Proteome Research. 2009;8(12):5412-5422.

2008

Alldridge L, Metodieva G, Greenwood C, et al. Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry. Journal of Proteome Research. 2008;7(4):1458-1469.

Faça VM, Ventura AP, Fitzgibbon MP, et al. Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains. PLoS ONE. 3(6).

Faca VM, Song KS, Wang H, et al. A Mouse to Human Search for Plasma Proteome Changes Associated with Pancreatic Tumor Development. PLoS Med. 2008;5(6):e123.

Fang Q, Strand A, Law W, et al. Brain-specific Proteins Decline in the Cerebrospinal Fluid of Humans with Huntington’s Disease. Molecular & Cellular Proteomics. 2009;8(3):451 -466.

Jansen K, Blimkie D, Furlong J, et al. Polychromatic flow cytometric high-throughput assay to analyze the innate immune response to Toll-like receptor stimulation. Journal of Immunological Methods. 2008;336(2):183-192.

Krasnoselsky AL, Faca VM, Pitteri SJ, Zhang Q, Hanash SM. Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome. Journal of Proteome Research. 2008;7(6):2546-2552.

McElrath MJ, De Rosa SC, Moodie Z, et al. HIV-1 vaccine-induced immunity in the test-of-concept Step Study: a case–cohort analysis. The Lancet. 2008;372(9653):1894-1905.

Nelson WD, Viele K, Lynn BC. An integrated approach for automating validation of extracted ion chromatographic peaks. Bioinformatics. 2008;24(18):2103 -2104.

Ramos-Fernández A, Paradela A, Navajas R, Albar JP. Generalized Method for Probability-based Peptide and Protein Identification from Tandem Mass Spectrometry Data and Sequence Database Searching. 2008;7(9):1748-1754.

Zhang Q, Menon R, Deutsch EW, et al. A mouse plasma peptide atlas as a resource for disease proteomics. Genome Biol. 2008;9(6):R93.

2007

Mato JM, He F, Beretta L. The 2006 Human Liver Proteome Project (HLPP) Workshops . Prot. Clin. Appl. 2007;1(5):442-445.

May D, Fitzgibbon M, Liu Y, et al. A Platform for Accurate Mass and Time Analyses of Mass Spectrometry Data. 2007;6(7):2685-2694.

Pereira-Faca SR, Kuick R, Puravs E, et al. Identification of 14-3-3(theta)as an Antigen that Induces a Humoral Response in Lung Cancer. Cancer Research. 2007;67(24):12000 -12006.

Whiteaker JR, Zhang H, Zhao L, et al. Integrated Pipeline for Mass Spectrometry-Based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer. Journal of Proteome Research. 2007;6(10):3962-3975.

2006

Cottingham K. Proteomics Projects: HUPO HLPP takes on a herculean task. Journal of Proteome Research. 2006;5(9):2077.

Faca V, Coram M, Phanstiel D, et al. Quantitative Analysis of Acrylamide Labeled Serum Proteins by LC−MS/MS. Journal of Proteome Research. 2006;5(8):2009-2018.

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