Resource Library

Publications

Posters

Research Using LabKey

2010

Cha S, Imielinski MB, Rejtar T, et al. In Situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection (LCM)-LC/MS: Annotation by protein set enrichment analysis (PSEA) and gene ontology (GO). Molecular & Cellular Proteomics. 2010.

Gano JJ, Simon JA. A Proteomic Investigation of Ligand-dependent HSP90 Complexes Reveals CHORDC1 as a Novel ADP-dependent HSP90-interacting Protein. Molecular & Cellular Proteomics. 2010;9(2):255-270.

Goodridge JP, Burian A, Lee N, Geraghty DE. HLA-F Complex without Peptide Binds to MHC Class I Protein in the Open Conformer Form. J Immunol. 2010;184(11):6199-6208.

Kullolli M, Hancock WS, Hincapie M. Automated Platform for Fractionation of Human Plasma Glycoproteome in Clinical Proteomics. Analytical Chemistry. 2010;82(1):115-120.

Li J, Hosseini Moghaddam SH, Chen X, Chen M, Zhong B. Shotgun strategy-based proteome profiling analysis on the head of silkworm Bombyx mori. Amino Acids. 2010;39(3):751-761.

Yu W, Taylor JA, Davis MT, et al. Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines. Proteomics. 2010;10(6):1172-1189.

Zeng Z, Hincapie M, Haab BB, et al. The development of an integrated platform to identify breast cancer glycoproteome changes in human serum. Journal of Chromatography A. 2010;1217(19):3307-3315.

Zornetzer GA, Frieman MB, Rosenzweig E, et al. Transcriptomic analysis reveals a mechanism for a pre-fibrotic phenotype in STAT1 knockout mice during SARS-Coronavirus infection. J Virol. 2010.

2009

Fornek JL, Gillim-Ross L, Santos C, et al. A Single-Amino-Acid Substitution in a Polymerase Protein of an H5N1 Influenza Virus Is Associated with Systemic Infection and Impaired T-Cell Activation in Mice. J. Virol. 2009;83(21):11102-11115.

Katayama H, Paczesny S, Prentice R, et al. Application of serum proteomics to the Women’s Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings. Genome Med. 2009;1(4):47.

Kollmann TR, Crabtree J, Rein-Weston A, et al. Neonatal Innate TLR-Mediated Responses Are Distinct from Those of Adults. J Immunol. 2009;183(11):7150-7160.

Lazarev AV, Rejtar T, Dai S, Karger BL. Centrifugal methods and devices for rapid in-gel digestion of proteins. Electrophoresis. 2009;30(6):966-973.

Li J, Chen X, Fan W, et al. Proteomic and Bioinformatic Analysis on Endocrine Organs of Domesticated Silkworm, Bombyx mori L. for a Comprehensive Understanding of Their Roles and Relations. Journal of Proteome Research. 2009;8(6):2620-2632.

Pitteri SJ, Hanash SM, Aragaki A, et al. Postmenopausal estrogen and progestin effects on the serum proteome. Genome Med. 1(12):121-121. 2009.

Wang H, Wong C, Chin A, et al. Quantitative Serum Proteomics Using Dual Stable Isotope Coding and nano LC-MS/MSMS. Journal of Proteome Research. 2009;8(12):5412-5422.

2008

Alldridge L, Metodieva G, Greenwood C, et al. Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry. Journal of Proteome Research. 2008;7(4):1458-1469.

Faça VM, Ventura AP, Fitzgibbon MP, et al. Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains. PLoS ONE. 3(6).

Faca VM, Song KS, Wang H, et al. A Mouse to Human Search for Plasma Proteome Changes Associated with Pancreatic Tumor Development. PLoS Med. 2008;5(6):e123.

Fang Q, Strand A, Law W, et al. Brain-specific Proteins Decline in the Cerebrospinal Fluid of Humans with Huntington’s Disease. Molecular & Cellular Proteomics. 2009;8(3):451 -466.

Jansen K, Blimkie D, Furlong J, et al. Polychromatic flow cytometric high-throughput assay to analyze the innate immune response to Toll-like receptor stimulation. Journal of Immunological Methods. 2008;336(2):183-192.

Krasnoselsky AL, Faca VM, Pitteri SJ, Zhang Q, Hanash SM. Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome. Journal of Proteome Research. 2008;7(6):2546-2552.

McElrath MJ, De Rosa SC, Moodie Z, et al. HIV-1 vaccine-induced immunity in the test-of-concept Step Study: a case–cohort analysis. The Lancet. 2008;372(9653):1894-1905.

Nelson WD, Viele K, Lynn BC. An integrated approach for automating validation of extracted ion chromatographic peaks. Bioinformatics. 2008;24(18):2103 -2104.

Ramos-Fernández A, Paradela A, Navajas R, Albar JP. Generalized Method for Probability-based Peptide and Protein Identification from Tandem Mass Spectrometry Data and Sequence Database Searching. 2008;7(9):1748-1754.

Zhang Q, Menon R, Deutsch EW, et al. A mouse plasma peptide atlas as a resource for disease proteomics. Genome Biol. 2008;9(6):R93.

2007

Mato JM, He F, Beretta L. The 2006 Human Liver Proteome Project (HLPP) Workshops . Prot. Clin. Appl. 2007;1(5):442-445.

May D, Fitzgibbon M, Liu Y, et al. A Platform for Accurate Mass and Time Analyses of Mass Spectrometry Data. 2007;6(7):2685-2694.

Pereira-Faca SR, Kuick R, Puravs E, et al. Identification of 14-3-3(theta)as an Antigen that Induces a Humoral Response in Lung Cancer. Cancer Research. 2007;67(24):12000 -12006.

Whiteaker JR, Zhang H, Zhao L, et al. Integrated Pipeline for Mass Spectrometry-Based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer. Journal of Proteome Research. 2007;6(10):3962-3975.

2006

Cottingham K. Proteomics Projects: HUPO HLPP takes on a herculean task. Journal of Proteome Research. 2006;5(9):2077.

Faca V, Coram M, Phanstiel D, et al. Quantitative Analysis of Acrylamide Labeled Serum Proteins by LC−MS/MS. Journal of Proteome Research. 2006;5(8):2009-2018.